Bioinformatician · Haripur, Khyber Pakhtunkhwa · ORCID 0000-0002-9983-4683
I'm a Bioinformatician, and my areas of interest are cancer genomics, CT imaging, and multi-omic microbiome analysis. The core project pairs gene expression signatures with CT-derived radiomic features, both pulled from the same TCGA-LIHC liver cancer cohort. I'm now folding microbiome data into that same framework.
Research
Cancer multi-omics, radiogenomics, and the imaging both of them lean on. Beside this panel sits the hub set from my HCC study; hover any gene name to locate it.
A single pipeline running from gene retrieval to a survival model. DisGeNET seeds the candidate set, GO and KEGG enrichment pins down the biology, and a STRING network scored in Cytoscape with CytoHubba surfaces the hubs. Four classifiers (SVM, random forest, XGBoost, logistic regression) train on TCGA-LIHC expression, after which LASSO-Cox asks whether the resulting signature carries any prognostic weight.
Can the appearance of a lesion on CT tell you anything about what it is doing molecularly? Liver lesions get segmented, radiomic features extracted, and those features tested against molecular subtypes derived from TCGA-LIHC expression. Same cohort as the study above, reached from the imaging side.
Work
Contacting api.github.com…
The network sits in the field behind this panel. Drag any node to move it, click one to open the inspector, or switch over to the plain list.
Toolkit
Four clusters, matching the four out in the field beside this panel. Hover an entry to locate it.
Contact